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钟扬教授

 

upload/1210050852248.jpg     钟扬,15岁考入中国科学技术大学少年班,20岁毕业于该校无线电电子学系。40岁获日本国立综合研究大学院大学生物系统科学博士。现任上海生物信息技术研究中心副主任,复旦大学生命科学院教授,西藏大学生物多样性与地生物学研究所所长. 兼任科学通报BMC BioinformaticsJournal of Bioscience等国际杂志编委。
    青年时光大半在风景如画的植物园度过,坚持自学植物学(在中科院武汉植物所工作15年,含在加州大学柏克莱分校和密执安州立大学4年);35岁后转入复旦大学从事进化生物学和生物信息学研究,发表论文100余篇, 两次获教育部自然科学一等奖;45岁获国家杰出青年基金(植物学)和教育部长江特聘教授。

主要研究方向: 生物信息学, 分子进化与系统发育

著作和译著:

大流感——最致命瘟疫的史诗
(美)巴里 / 2008-12-1 / 上海科技教育出版社 / 最致命瘟疫的史诗 / 49.8 / 平装 / 钟扬 / 赵佳媛 / 刘念
ISBN: 9787542847225
页数: 636

林肯的DNA以及遗传学上的其他冒险
(美)菲利普·R·赖利 / 2005-9-1 / 上海科技教育出版社 / 33.0 / 平装 / 钟扬
ISBN: 9787542837974
页数: 375

分子进化与系统发育 / Molecular Evolution and Phylogenetics
Kumar
著吕宝忠 / ()Sudhir / ()Masatoshi / 钟扬 / Nei / 2002-6-1 / 高等教育出版社 / 32.0 / 平装 / 根井正利 / 299
ISBN: 9787040112047
页数: 299

基因女郎伽莫夫
詹姆斯·D·沃森 / 2003-4-1 / 上海科技教育出版社 / 23.5 / 平装 / 赵琼 / 钟扬 / 沈玮 / 王旭
ISBN: 9787542831323
页数: 263

计算分子进化(复旦大学进化生物学书丛)
(英)杨子恒 / 2008-6-1 / 复旦大学出版社 / 58.0 / 平装 / 钟扬
ISBN: 9787309060423
页数: 364

生物信息学(中文版)
(
)芒特 / 2003-09-01 / 高等教育出版社 / 56.00 / 平装 / 钟扬
ISBN: 9787040121872

DNA
博士
(匈)豪尔吉陶伊 / 2009-10-1 / 上海科学技术出版社 / 与沃森的坦诚对话 / 32.00 / 平装 / 杨桢 / 钟扬 / 赵佳媛
ISBN: 9787532398669
页数: 225

简明生物信息学
钟扬等编 / 2001-12-1 / 高等教育出版社 / 15.9 / 平装
ISBN: 9787040101591

代表性论文:
[1] Jung, S., Perkins, S., Zhong, Y., Pramanik, S., Beaman, J. H. 1995. A new data model for biological classification. Computer Applications in Biosciences (CABIOS) 11: 237-246.
[2] Zhong, Y., Jung, S, Pramanik, S, Beaman, J H. 1996. Data model and comparison and query methods for interacting classifications in a taxonomic database. Taxon 45(2): 223-241.
[3] Zhong, Y., Meacham, C. A., Pramanik, S. 1997. A general method for tree-comparison based on subtree similarity and its use in a taxonomic database. BioSystems 42: 1-8.
[4] Zhong, Y., Luo, Y., Pramanik, S., Beaman, J. H. 1999. HICLAS: a taxonomic database system for displaying and comparing biological classification and phylogenetic trees. Bioinformatics 15(2): 149-156.
[5] Zhong, Y., Shi, S. H., Tang, X. H., Huang, Y. L., Tan, F. X., Zhang, X. Y. 2000. Testing relative evolutionary rates and estimating divergence times among six genera of Rhizophoraceae using cpDNA and nrDNA sequences. Chinese Science Bulletin 45: 1011-1015.
[6] Shi, S., Jin, H., Zhong, Y., He, X., Huang, Y., Tan, F., Boufford, D. E. 2000. Phylogenetic relationships of the Magnoliaceae inferred from cpDNA matK sequences. Theoretical and Applied Genetics 101: 925-930.
[7] Sang, T., Zhong, Y. 2000. Testing hybridization hypotheses based on incongruent gene trees. Systematic Biology 49: 422-434.
[8] Cui, X. H., Zhong, Y., Chen, J. K. 2000. Influence of a catastrophic flood on densities and biomasses of three plant species in Poyang Lake, China. Journal of Freshwater Ecology 15: 537-541.
[9] He, Z. C., Zhang, X. Y., Zhong, Y., Ye, L. 2000. Phylogenetic relationships of Actinidia and related genera based on micromorphological characters of foliar trichomes. Genetic Resources and Crop Evolution 47: 627-639.
[10] Wang, J. B., Wang, C., Shi, S. H., Zhong, Y. 2000. ITS regions in diploids of Aegilops (Poaceae) and their phylogenetic implications. Hereditas 132: 209-213.
[11] Wang, J. B., Wang, C., Shi, S. H., Zhong, Y. 2000. Evolution of parental ITS regions of nuclear rDNA in allopolyploid Aegilops (Poaceae) species. Hereditas 133: 1-7.
[12] Zhong, Y., Zhang, L., Su, D. M. 2000. Collaborations tailored for bioinformatics projects. Science 290: 2074. (Letter)
[13] Shi, S., Huang, Y., Zhong, Y., Du, Y., Zhang, Q., Chang, H., Boufford, D.E. 2001. Phylogeny of the Altingiaceae based on cpDNA matK, PY-IGS and nrDNA ITS sequences. Plant Systematics and Evolution 230: 13-24.
[14]Wu, J., Liang, Y., Zhong, Y., Fu, C., Chen, J. 2002. Advances in phylogenetic studies of Nematoda. Chinese Science Bulletin 47: 10-15.
[15] Huang, Y., Shi, S., Zhong, Y., Tan, F. 2002. A new method for preparation of template DNA for PCR from special plant materials. Chinese Science Bulletin 47: 725-727.
[16] Shi, S., Zhong, Y., Huang, Y., Du, Y., Qiu, X., Chang, H. 2002. Phylogenetic relationships of the Rhizophoraceae in China based on sequences of the chloroplast gene matK and the internal transcribed spacer regions of nuclear ribosomal DNA and combined data set. Biochemical Systematics and Ecology 30: 309-319.
[17] Zhong, Y., Zhao, Q., Shi, S., Huang, Y., Hasegawa, M. 2002. Detecting evolutionary rate heterogeneity among mangroves and their close terrestrial relatives. Ecology Letters 5(3): 427-432.
[18]Nan, P., Peng, S., Zhang, Y., Zhong, Y. 2002. Composition of volatile oil of Primula obconica in Central China. Natural Product Letters 16(4): 249-253. (Corresponding author)
[19] Tian, C., He, X., Zhong, Y., Chen, J. 2002. Effects of VA mycorrhizae and Frankia dual inoculation on growth and nitrogen fixation of Hippophae Tibetan. Forest Ecology and Management 176: 307-312.
[20] Yang, J., Huang, J., Gu, H., Zhong, Y., Yang, Z. 2002. Duplication and adaptive evolution of the chalcone synthase genes of Dendranthema (Asteraceae). Molecular Biology and Evolution 19: 1752-1759.
[21] Tan, F., Shi, S., Zhong, Y., Gong, X., Wang, Y. 2002. Phylogenetic relationships of Combretoideae (Combretaceae) inferred from plastid, nuclear gene and spacer sequences. Journal of Plant Research 115: 475-481.
[22] Nan, P., Shi, S., Peng, S., Tian, C., Zhong, Y. 2003. Genetic diversity in Primula obconica from Central and South-west China as revealed by ISSR markers. Annals of Botany 91: 329-333. (Corresponding author)
[23] Nan, P., Peng, S., Shi, S., Ren, H., Yang, J., Zhong, Y. 2003. Interpopulation congruence in Chinese Primula ovalifolia revealed by chemical and molecular markers using essential oils and ISSRs. Zeitschrift fur Naturforschung 58c: 57-61. (Corresponding author)
[24] Tian, C., He, X., Zhong, Y., Chen, J. 2003. Effect of inoculation with ecto- and arbuscular mycorrhizae and Rhizobium on the growth and nitrogen fixation by black locust, Robinia pseudoacacia. New Forests 25: 125-131.
[25]Zhong, Y., Zhang, X., Ma, J., Zhang, L. 2003. Rapid development of bioinformatics education in China. Journal of Biological Education 37: 75-79.
[26] Zhang, X., Zhong, Y., Chen, J. 2003. Fanwort in Eastern China: an invasive aquatic plant and potential ecological consequences. AMBIO 32: 158-159.
[27] Lei, Y., Nan, P., Tsering, T., Bai, Z., Tian, C., Zhong, Y. 2003. Chemical composition of the essential oils of two Rhodiola species from Tibet. Zeitschrift fur Naturforschung 58c: 161-164. (Corresponding author)
[28] Yu, X. J., Luo, C., Lin, J., Hao, P., He, Y., Guo, Z., Qin, L., Su, J., Liu, B., Huang, Y., Nan, P., Li, C., Xiong, B., Luo, X., Zhao, G., Pei, G., Chen, K., Shen, X., Zou, J., He, W., Shi, T., Zhong, Y., Jiang, H., Li, Y. 2003. Putative hAPN receptor binding sites in SARS_CoV spike protein. Acta Pharmacologica Sinica 24: 481-488. (One of corresponding authors)
[29] Qin, L., Xiong, B., Luo, C., Guo, Z. M., Hao, P., Su, J., Nan, P., Feng, Y., Shi, Y. X., Yu, X. J., Luo, X. M., Chen, K. X., Shen, X., Shen, J. H., Zou, J, P., Zhao, G. P., Shi, T. L., He, W. Z., Zhong, Y., Jiang, H. L., Li, Y. X. 2003. Identification of probable genomic packaging signal sequence from SARS_CoV genome by bioinformatics analysis. Acta Pharmacologica Sinica 24: 489-496. (One of corresponding authors)
[30] Yuan, C., Nan, P., Shi, S., Zhong, Y. 2003. Chemical composition of the essential oils of two Chinese endemic Meconopsis species. Zeitschrift fur Naturforschung 58c: 313-315. (Corresponding author)
[31] Pang, J., Wang, Y., Zhong, Y., Hoelzel, A. R., Papenfuss, T. J., Zeng, X., Ananjeva, N. B., Zhang, Y. P. 2003. A phylogeny of Chinese species in the genus Phrynocephalus (Agamidae) inferred from mitochondrial DNA sequences. Molecular Phylogenetics and Evolution 27: 398-409.
[32] Ren, W., Zhong, Y., Meligrana, J., Anderson, B., Watt, W. E., Chen, J., Leung, H. L. 2003. Urbanization, land use, and water quality in Shanghai: 1947-1996. Enviroment International 29: 649-659.
[33] Shi, S., Du, Y., Boufford, D. E., Gong, X., Huang, Y., He, H., Zhong, Y. 2003. Phylogenetic position of Schnabelia, a genus endemic to China: Evidence from sequences of cpDNA matK gene and nrDNA ITS regions. Chinese Science Bulletin 48: 1576-1580. (Corresponding author)
[34] Tang, T., Zhong, Y., Jian, S., Shi, S. 2003. Genetic diversity of Hibiscus tiliaceus (Malvaceae) in China assessed using AFLP makers. Annals of Botany 92: 409-414.
[35] The Chinese SARS Molecular Epidemiology Consortium. 2004. Molecular evolution of the SARS coronavirus during the course of the SARS epidemic in China. Science 303: 1666-1669. (Equal first author)
[36] Tian, C., Nan, P., Chen, J., Zhong, Y. 2004. Volatile composition of Chinese Hippophae rhamnoides and its chemotaxonomic implications. Biochemical Systematics and Ecology 32: 431-441. (Corresponding author)
[37] Tian, C., Lei, Y., Shi, S., Nan, P., Chen, J., Zhong, Y. 2004. Genetic diversity of sea buckthorn (Hippophae rhamnoides) populations in northeastern and northwestern China as revealed by ISSR markers. New Forests 27: 229-237. (Corresponding author)
[38] Lei, Y., Nan, P., Tsering, T., Wang, L., Liu, S., Zhong, Y. 2004. Interpopulation variability of rhizome essential oils in Rhodiola crenulate from Tibet and Yunnan, China. Biochemical Systematics and Ecology 32: 611-614. (Corresponding author)
[39] Jian, S., Tang, T., Zhong, Y., Shi, S. 2004. Variation in inter-simple sequence repeat (ISSR) in mangrove and non-mangrove populations of Heritiera littoralis (Sterculiaceae) from China and Australia. Aquatic Botany 79: 75-86.
[40] He, S., Liu, H., Chen, Y., Kuwahara, M., Nakajima, T., Zhong, Y. 2004. Molecular phylogenetic relationships of Eastern Asian Cyprinidae (Pisces: Cypriniformes) inferred from cytochrome b sequences. Science in China Ser. C 47: 130-138.
[41] Zhao, J., Nan, P., Zhong, Y. 2004. Chemical composition of the essential oils of Clausena lansium from Hainan Island, China. Zeitschrift fur Naturforschung 59c: 153-156. (Corresponding author)
[42] Nan, P., Hu, Y., Zhao, J., Feng, Y., Zhong, Y. 2004. Chemical composition of the essential oils of two Alpinia species from Hainan Island, China. Zeitschrift fur Naturforschung 59c: 157-160. (Corresponding author)
[43] Qin, Z., Zhong, Y., Zhang, J., He, Y., Wu, Y., Jiang, J., Chen, J., Luo, X., Qu, D. 2004. Bioinformatics analysis of two-component regulatory systems in Staphylococcus epidermidis. Chinese Science Bulletin 49: 1267-1271. (Corresponding author)
[44] Zhang, Y., Zheng, N., Hao, P., Zhong, Y. 2004. Reconstruction of the most recent common ancestor sequences of SARS-Cov S gene and detection of adaptive evolution in the spike protein. Chinese Science Bulletin 49: 1311-1313. (Corresponding author)
[45] Cao, S., Qin, L., He, W., Zhong, Y., Zhu, Y., Li, Y. 2004. Semantic search among heterogeneous biological databases based on gene ontology. Acta Biochimica et Biophysica Sinica 36: 365-370.
[46] Wang, L., Jian, S., Nan, P., Zhong, Y. 2004. Chemical composition of the essential oil of Elephantopus scaber from southern China. Zeitschrift fur Naturforschung 59c: 327-329. (Corresponding author)
[47] Tian, C., Nan, P., Shi, S., Chen, J., Zhong, Y. 2004. Molecular genetic variation in Chinese populations of three subspecies of Hippophae rhamnoides. Biochemical Genetics 42: 259-267. (Corresponding author)
[48] Ren, Z., Ma, E., Guo, Y., Zhong, Y. 2004. A molecular phylogeny of Oxya (Orthoptera: Acridoidea) in China inferred from partial cytochrome b gene sequences. Molecular Phylogenetics and Evolution 33: 516-521.
[49] Tang, T., Huang, J., Zhong, Y., Shi, S. 2004. High-throughput S-SAP by fluorescent multiplex PCR and capillary electrophoresis in plants. Journal of Biotechnology 114: 59-68.
[50] Chen, Z., Li, B., Zhong, Y., Chen, J. 2004. Local competitive effects of introduced Spartina alterniflora on Scirpus mariqueter at Dongtan of Chongming Island, the Yangtze river estuary and their potential ecological consequences. Hydrobiologia 528: 99-106.
[51] Zhang, L., Wu, G., Xu, Y., Li, W., Zhong, Y. 2004. Multilingual collection retrieving via ontology alignment. Lecture Notes in Computer Science 3334: 510-514.
[52] Chen, Y., Zhong, Y., Tian, B., Yang, J., Li, D. 2005. Statistical analysis on adaptive evolution of SQUA genes in angiosperms. Progess in Natural Science 15: 93-96.
[53] Fu, C., Luo, J., Wu, J., Lopez, A., Zhong, Y., Lei, G., Chen, J. 2005. Phylogenetic relationships of salangid fishes (Osmeridae, Salanginae) with comments on phylogenetic placement of the salangids based on mitochondrial DNA sequences. Molecular Phylogenetics and Evolution 35: 76-84.

 




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